Index

A

adjust_for_partition() (libertem.io.dataset.base.TilingScheme method) adjust_for_roi() (libertem.common.slice.Slice method) adjust_tileshape() (libertem.io.dataset.base.DataSet method) Analysis (class in libertem.analysis.base) AnalysisResult (class in libertem.analysis.base) AnalysisResultSet (class in libertem.analysis.base) ApplyMasksUDF (class in libertem.udf.masks) arr (libertem.common.buffers.ArrayWithMask property) array_backend (libertem.udf.base.UDFMeta property)

array_backends (libertem.io.dataset.base.DataSet property) ArrayWithMask (class in libertem.common.buffers) assert_all_alive() (libertem.executor.pipelined.WorkerPool method) assert_sparse() (in module libertem.common.sparse) AsyncConcurrentJobExecutor (class in libertem.executor.concurrent) AsyncDaskJobExecutor (class in libertem.executor.dask) AsyncJobExecutor (class in libertem.common.executor) aux_data() (libertem.udf.base.UDF class method) AuxBufferWrapper (class in libertem.common.buffers)

B

BACKEND_ALL (libertem.udf.base.UDF attribute) BACKEND_CUDA (libertem.udf.base.UDF attribute) BACKEND_CUPY (libertem.udf.base.UDF attribute) BACKEND_CUPY_SCIPY_COO (libertem.udf.base.UDF attribute) BACKEND_CUPY_SCIPY_CSC (libertem.udf.base.UDF attribute) BACKEND_CUPY_SCIPY_CSR (libertem.udf.base.UDF attribute) BACKEND_NUMPY (libertem.udf.base.UDF attribute) BACKEND_SCIPY_COO (libertem.udf.base.UDF attribute) BACKEND_SCIPY_COO_ARRAY (libertem.udf.base.UDF attribute) BACKEND_SCIPY_CSC (libertem.udf.base.UDF attribute) BACKEND_SCIPY_CSC_ARRAY (libertem.udf.base.UDF attribute) BACKEND_SCIPY_CSR (libertem.udf.base.UDF attribute) BACKEND_SCIPY_CSR_ARRAY (libertem.udf.base.UDF attribute) BACKEND_SPARSE_COO (libertem.udf.base.UDF attribute)

BACKEND_SPARSE_DOK (libertem.udf.base.UDF attribute) BACKEND_SPARSE_GCXS (libertem.udf.base.UDF attribute) background_subtraction() (in module libertem.masks) balance() (in module libertem.masks) BasePartition (class in libertem.io.dataset.base) batched() (in module libertem.common.buffers) BloDataSet (class in libertem.io.dataset.blo) bounding_radius() (in module libertem.masks) BQLive2DPlot (class in libertem.viz.bqp) buffer() (libertem.udf.base.UDF method) BufferedBackend (class in libertem.io.dataset.base) BufferPool (class in libertem.common.buffers) BufferWrapper (class in libertem.common.buffers) bytes() (libertem.common.buffers.BufferPool method) bytes_aligned() (in module libertem.common.buffers)

C

cx (namedtuple field) CoMParams (namedtuple in libertem.udf.com) GuessResult (namedtuple in libertem.udf.com) cy (namedtuple field) CoMParams (namedtuple in libertem.udf.com) GuessResult (namedtuple in libertem.udf.com) c_contiguous (libertem.io.dataset.base.DataTile property) cancel() (libertem.common.executor.AsyncJobExecutor method) check_valid() (libertem.io.dataset.base.DataSet method) checkin_bytes() (libertem.common.buffers.BufferPool method) checkout_bytes() (libertem.common.buffers.BufferPool method) circular() (in module libertem.masks) clip_to() (libertem.common.slice.Slice method) close() (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) cluster_spec() (in module libertem.executor.dask) CoMParams (namedtuple in libertem.udf.com) cx (namedtuple field) cy (namedtuple field) flip_y (namedtuple field) r (namedtuple field) regression (namedtuple field) ri (namedtuple field) scan_rotation (namedtuple field)

COMResultSet (class in libertem.analysis.com) CoMUDF (class in libertem.udf.com) ConcurrentJobExecutor (class in libertem.executor.concurrent) ConcurrentWorkerContext (class in libertem.executor.concurrent) connect() (libertem.executor.dask.DaskJobExecutor class method) consolidate_result() (in module libertem.udf.stddev) Context (class in libertem.api) convert_dm4_transposed() (in module libertem.contrib.convert_transposed) coordinates (libertem.udf.base.UDFMeta property) copy_for_partition() (libertem.udf.base.UDF method) corrections (libertem.udf.base.UDFMeta property) CorrectionSet (class in libertem.io.corrections) CPU_BACKENDS (libertem.udf.base.UDF attribute) cpus (libertem.utils.devices.DetectResult attribute) create_com_analysis() (libertem.api.Context method) create_disk_analysis() (libertem.api.Context method) create_mask_analysis() (libertem.api.Context method) create_pick_analysis() (libertem.api.Context method) create_point_analysis() (libertem.api.Context method) create_radial_fourier_analysis() (libertem.api.Context method) create_ring_analysis() (libertem.api.Context method) create_sum_analysis() (libertem.api.Context method) CrystallinityUDF (class in libertem.udf.crystallinity) CUDA_BACKENDS (libertem.udf.base.UDF attribute) cudas (libertem.utils.devices.DetectResult attribute) CUPY_BACKENDS (libertem.udf.base.UDF attribute) curl (libertem.analysis.com.COMResultSet attribute)

D

D2_BACKENDS (libertem.udf.base.UDF attribute) DaskDataSet (class in libertem.io.dataset.dask) DaskJobExecutor (class in libertem.executor.dask) DaskResultBufferWrapper (class in libertem.executor.utils.dask_buffer) DaskWorkerContext (class in libertem.executor.dask) data (libertem.common.buffers.BufferWrapper property) (libertem.common.buffers.PlaceholderBufferWrapper property) (libertem.executor.utils.dask_buffer.DaskResultBufferWrapper property) (libertem.io.dataset.base.DataTile property) DataSet (class in libertem.io.dataset.base) dataset_dtype (libertem.udf.base.UDFMeta property) dataset_shape (libertem.io.dataset.base.TilingScheme property) (libertem.udf.base.UDFMeta property) DataSetException DataSetMeta (class in libertem.io.dataset.base) DataTile (class in libertem.io.dataset.base) decode_swap_2() (in module libertem.io.dataset.base) decode_swap_4() (in module libertem.io.dataset.base) Decoder (class in libertem.io.dataset.base) default_get_read_ranges() (in module libertem.io.dataset.base) delayed_data (libertem.executor.utils.dask_buffer.DaskResultBufferWrapper property) delayed_raw_data (libertem.executor.utils.dask_buffer.DaskResultBufferWrapper property) DelayedJobExecutor (class in libertem.executor.delayed) delete() (libertem.io.dataset.base.WritablePartition method) DENSE_BACKENDS (libertem.udf.base.UDF attribute) depth (libertem.io.dataset.base.TilingScheme property)

desc (libertem.analysis.base.AnalysisResult attribute) detect() (in module libertem.utils.devices) detect_params() (libertem.io.dataset.base.DataSet class method) DetectResult (class in libertem.utils.devices) device_class (libertem.udf.base.UDFMeta property) diagnostics (libertem.io.dataset.base.DataSet property) dims (libertem.common.shape.NavOnlyShape property) (libertem.common.shape.Shape property) (libertem.common.shape.SigOnlyShape property) DirectBackend (class in libertem.io.dataset.base) discard_nav() (libertem.common.slice.Slice method) disjoint() (in module libertem.common.buffers) display() (libertem.api.Context method) (libertem.viz.base.Dummy2DPlot method) (libertem.viz.base.Live2DPlot method) (libertem.viz.bqp.BQLive2DPlot method) (libertem.viz.gms.GMSLive2DPlot method) (libertem.viz.mpl.MPLLive2DPlot method) divergence (libertem.analysis.com.COMResultSet attribute) do_clear() (libertem.io.dataset.base.Decoder method) dtype (libertem.common.buffers.BufferWrapper property) (libertem.io.dataset.base.DataSet property) (libertem.io.dataset.base.DataTile property) (libertem.io.dataset.base.Partition property) DtypeConversionDecoder (class in libertem.io.dataset.base) Dummy2DPlot (class in libertem.viz.base)

E

EMPADDataSet (class in libertem.io.dataset.empad) empty() (libertem.common.buffers.BufferPool method) empty_aligned() (in module libertem.common.buffers) encode_image() (in module libertem.common.viz) end() (libertem.common.progress.ProgressReporter method) end_idx (libertem.io.dataset.base.File property)

ensure_async() (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) ensure_sync() (libertem.common.executor.JobExecutor method) ExecutorSpecException (class in libertem.common.exceptions) export_dataset() (libertem.api.Context method) extra_shape (libertem.common.buffers.BufferWrapper property) extract() (libertem.viz.base.Live2DPlot method)

F

flip_y (namedtuple field) CoMParams (namedtuple in libertem.udf.com) GuessResult (namedtuple in libertem.udf.com) FEMUDF (class in libertem.udf.FEM) field (libertem.analysis.com.COMResultSet attribute) File (class in libertem.io.dataset.base) file_header_bytes (libertem.io.dataset.base.File property) files_from() (libertem.io.dataset.base.FileSet method) FileSet (class in libertem.io.dataset.base) FileTree (class in libertem.io.dataset.base) flat_data (libertem.io.dataset.base.DataTile property) flatten_nav() (libertem.common.shape.Shape method) (libertem.common.shape.SigOnlyShape method) (libertem.common.slice.Slice method)

flatten_sig() (libertem.common.shape.NavOnlyShape method) (libertem.common.shape.Shape method) forbuf() (libertem.udf.base.UDF method) FRAME (libertem.common.udf.UDFMethod attribute) FRMS6DataSet (class in libertem.io.dataset.frms6) from_buffer_wrapper() (libertem.executor.utils.dask_buffer.DaskResultBufferWrapper class method) from_ds() (libertem.io.dataset.base.PartitionStructure class method) from_json() (libertem.io.dataset.base.BufferedBackend class method) (libertem.io.dataset.base.DirectBackend class method) (libertem.io.dataset.base.IOBackend class method) (libertem.io.dataset.base.MMapBackend class method) (libertem.io.dataset.base.PartitionStructure class method) from_shape() (libertem.common.slice.Slice class method)

G

get() (libertem.common.slice.Slice method) get_array_from_memview() (libertem.io.dataset.base.File method) get_as_arr() (libertem.io.dataset.base.FileSet method) get_available_workers() (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) get_backends() (libertem.udf.base.UDF method) (libertem.udf.logsum.LogsumUDF method) (libertem.udf.stddev.StdDevUDF method) (libertem.udf.sumsigudf.SumSigUDF method) get_base_shape() (libertem.io.dataset.base.DataSet method) get_cache_key() (libertem.io.dataset.base.DataSet method) get_cls_by_id() (libertem.io.dataset.base.IOBackend class method) get_coordinates() (in module libertem.io.dataset.base) get_correction_data() (libertem.io.dataset.base.DataSet method) get_dask_integration_executor() (in module libertem.executor.integration) get_decode() (libertem.io.dataset.base.Decoder method) (libertem.io.dataset.base.DtypeConversionDecoder method) get_decoder() (libertem.io.dataset.base.DataSet method) get_default_io_backend() (libertem.io.dataset.base.DataSet class method) get_device_class() (in module libertem.common.backend) get_diagnostics() (libertem.io.dataset.base.DataSet method) get_for_range() (libertem.io.dataset.base.FileSet method) get_for_sig_slice() (libertem.common.container.MaskContainer method) get_frame_count() (libertem.io.dataset.base.Partition method) get_ident() (libertem.io.dataset.base.Partition method) get_impl() (libertem.io.dataset.base.BufferedBackend method) (libertem.io.dataset.base.DirectBackend method) (libertem.io.dataset.base.IOBackend method) (libertem.io.dataset.base.MMapBackend method) get_io_backend() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.DataSet method) (libertem.io.dataset.base.Partition method) get_locations() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.Partition method) get_macrotile() (libertem.io.dataset.base.Partition method) get_max_io_size() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.DataSet method) get_method() (libertem.udf.base.UDF method) get_min_sig_size() (libertem.io.dataset.base.DataSet method) get_msg_converter() (libertem.io.dataset.base.DataSet class method)

get_native_dtype() (libertem.io.dataset.base.Decoder method) (libertem.io.dataset.base.DtypeConversionDecoder method) get_num_partitions() (libertem.io.dataset.base.DataSet method) get_offsets_sizes() (libertem.io.dataset.base.File method) get_parameters() (libertem.analysis.base.Analysis method) get_partitions() (libertem.io.dataset.base.DataSet method) get_preferred_input_dtype() (libertem.udf.base.NoOpUDF method) (libertem.udf.base.UDF method) get_read_ranges() (libertem.io.dataset.base.FileSet method) get_resource_details() (libertem.common.executor.JobExecutor method) get_resources_from_udfs() (libertem.executor.delayed.DelayedJobExecutor static method) get_result_buffers() (libertem.udf.base.NoOpUDF method) (libertem.udf.base.UDF method) get_results() (libertem.udf.base.UDF method) get_roi() (libertem.analysis.base.Analysis method) get_scheme() (libertem.io.dataset.base.Negotiator method) get_slices() (libertem.io.dataset.base.DataSet method) get_supported() (libertem.io.dataset.base.IOBackend class method) get_supported_extensions() (libertem.io.dataset.base.DataSet class method) get_supported_io_backends() (libertem.io.dataset.base.DataSet class method) get_sync_offset_info() (libertem.io.dataset.base.DataSet method) get_task_comm_handler() (libertem.io.dataset.base.DataSet method) get_task_data() (libertem.udf.base.UDF method) (libertem.udf.stddev.StdDevUDF method) get_tiles() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.Partition method) get_tiling_preferences() (libertem.udf.base.UDF method) get_udf() (libertem.analysis.base.Analysis method) (libertem.viz.base.Live2DPlot method) get_udf_results() (libertem.analysis.base.Analysis method) get_use_cpu() (in module libertem.common.backend) get_use_cuda() (in module libertem.common.backend) get_valid_nav_mask() (libertem.udf.base.UDFMeta method) get_valid_slice_inner() (libertem.common.buffers.BufferWrapper method) get_write_handle() (libertem.io.dataset.base.WritablePartition method) GMSLive2DPlot (class in libertem.viz.gms) gradient_x() (in module libertem.masks) gradient_y() (in module libertem.masks) guess_corrections() (in module libertem.udf.com) GuessResult (namedtuple in libertem.udf.com) cx (namedtuple field) cy (namedtuple field) flip_y (namedtuple field) scan_rotation (namedtuple field)

H

H5DataSet (class in libertem.io.dataset.hdf5)

has_cupy (libertem.utils.devices.DetectResult attribute) has_cupy() (in module libertem.utils.devices)

I

id_ (libertem.io.dataset.base.BufferedBackend attribute) (libertem.io.dataset.base.DirectBackend attribute) (libertem.io.dataset.base.IOBackend attribute) (libertem.io.dataset.base.MMapBackend attribute) initialize() (libertem.io.dataset.base.DataSet method) InlineJobExecutor (class in libertem.executor.inline) InlineWorkerContext (class in libertem.executor.inline) input_dtype (libertem.udf.base.UDFMeta property) intensity (libertem.analysis.masks.SingleMaskResultSet attribute) (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute) intensity_angle (libertem.analysis.masks.SingleMaskResultSet attribute) (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute) intensity_complex (libertem.analysis.masks.SingleMaskResultSet attribute) (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute)

intensity_imag (libertem.analysis.masks.SingleMaskResultSet attribute) (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute) intensity_lin (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute) intensity_log (libertem.analysis.masks.SingleMaskResultSet attribute) intensity_real (libertem.analysis.masks.SingleMaskResultSet attribute) (libertem.analysis.raw.PickResultSet attribute) (libertem.analysis.sum.SumResultSet attribute) intent (libertem.io.dataset.base.TilingScheme property) intersection_with() (libertem.common.slice.Slice method) InvalidMaskError IOBackend (class in libertem.io.dataset.base) is_null() (libertem.common.slice.Slice method) is_sparse() (in module libertem.common.sparse)

J

JobExecutor (class in libertem.common.executor)

K

K2ISDataSet (class in libertem.io.dataset.k2is)

key (libertem.analysis.base.AnalysisResult attribute) kind (libertem.common.buffers.BufferWrapper property)

L

libertem.analysis.base module libertem.analysis.com module libertem.analysis.masks module libertem.analysis.radialfourier module libertem.analysis.raw module libertem.analysis.sum module libertem.api module libertem.common.backend module libertem.common.buffers module libertem.common.container module libertem.common.executor module libertem.common.shape module libertem.common.slice module libertem.common.sparse module libertem.common.viz module libertem.contrib.daskadapter module

libertem.executor.concurrent module libertem.executor.dask module libertem.executor.delayed module libertem.executor.inline module libertem.executor.integration module libertem.executor.pipelined module libertem.io.dataset.base module libertem.masks module libertem.udf.crystallinity module libertem.udf.FEM module libertem.utils.devices module libertem.viz.base module libertem.viz.bqp module libertem.viz.gms module libertem.viz.mpl module Live2DPlot (class in libertem.viz.base) load() (libertem.api.Context method) LogsumUDF (class in libertem.udf.logsum)

M

message (namedtuple field) WorkerQueues (namedtuple in libertem.executor.pipelined) magnitude (libertem.analysis.com.COMResultSet attribute) make() (libertem.io.dataset.base.FileTree class method) make_dask_array() (in module libertem.contrib.daskadapter) make_for_shape() (libertem.io.dataset.base.TilingScheme class method) make_get_read_ranges() (in module libertem.io.dataset.base) make_local() (libertem.executor.concurrent.ConcurrentJobExecutor class method) (libertem.executor.dask.DaskJobExecutor class method) (libertem.executor.pipelined.PipelinedExecutor class method) make_slices() (libertem.io.dataset.base.Partition class method) make_with() (libertem.api.Context class method) ManagedBuffer (class in libertem.common.buffers) map() (libertem.api.Context method) (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) mask (libertem.common.buffers.ArrayWithMask property) MaskContainer (class in libertem.common.container) masked_data (libertem.common.buffers.BufferWrapper property) MasksResultSet (class in libertem.analysis.masks) MAX_PARTITION_SIZE (libertem.io.dataset.base.DataSet attribute) MemoryDataSet (class in libertem.io.dataset.memory) merge() (libertem.udf.base.UDF method) merge_all() (libertem.udf.base.UDFMergeAllMixin method) meta (libertem.io.dataset.base.DataSet property) MIBDataSet (class in libertem.io.dataset.mib) MMapBackend (class in libertem.io.dataset.base) modify_buffer_type() (libertem.common.executor.JobExecutor method)

module libertem.analysis.base libertem.analysis.com libertem.analysis.masks libertem.analysis.radialfourier libertem.analysis.raw libertem.analysis.sum libertem.api libertem.common.backend libertem.common.buffers libertem.common.container libertem.common.executor libertem.common.shape libertem.common.slice libertem.common.sparse libertem.common.viz libertem.contrib.daskadapter libertem.executor.concurrent libertem.executor.dask libertem.executor.delayed libertem.executor.inline libertem.executor.integration libertem.executor.pipelined libertem.io.dataset.base libertem.masks libertem.udf.crystallinity libertem.udf.FEM libertem.utils.devices libertem.viz.base libertem.viz.bqp libertem.viz.gms libertem.viz.mpl MPLLive2DPlot (class in libertem.viz.mpl) MRCDataSet (class in libertem.io.dataset.mrc)

N

native_dtype (libertem.io.dataset.base.File property) nav (libertem.common.shape.Shape property) (libertem.common.slice.Slice property) nav_dims (libertem.common.shape.NavOnlyShape property) (libertem.common.shape.Shape property) (libertem.common.shape.SigOnlyShape property) NavOnlyShape (class in libertem.common.shape) ND_BACKENDS (libertem.udf.base.UDF attribute) need_decode() (libertem.io.dataset.base.DataSet method) need_rerun() (libertem.analysis.base.Analysis method) Negotiator (class in libertem.io.dataset.base)

new_data() (libertem.viz.base.Live2DPlot method) new_for_partition() (libertem.common.buffers.AuxBufferWrapper method) NO_REGRESSION (libertem.udf.com.RegressionOptions attribute) NoOpUDF (class in libertem.udf.base) NPYDataSet (class in libertem.io.dataset.npy) num_frames (libertem.io.dataset.base.File property) num_frames_complete (libertem.common.progress.ProgressState attribute) num_frames_total (libertem.common.progress.ProgressState attribute) num_part_complete (libertem.common.progress.ProgressState attribute) num_part_in_progress (libertem.common.progress.ProgressState attribute) num_part_total (libertem.common.progress.ProgressState attribute)

O

origin (libertem.common.slice.Slice attribute)

P

process (namedtuple field) PoolWorkerInfo (namedtuple in libertem.executor.pipelined) Partition (class in libertem.io.dataset.base) PARTITION (libertem.common.udf.UDFMethod attribute) partition_shape (libertem.udf.base.UDFMeta property) partition_shape() (libertem.io.dataset.base.DataSet method) PartitionStructure (class in libertem.io.dataset.base) path (libertem.io.dataset.base.File property) PickResultSet (class in libertem.analysis.raw) PickUDF (class in libertem.udf.raw) pipelined_worker() (in module libertem.executor.pipelined) PipelinedExecutor (class in libertem.executor.pipelined) PipelinedWorkerContext (class in libertem.executor.pipelined) PlaceholderBufferWrapper (class in libertem.common.buffers) platform_supported() (libertem.io.dataset.base.DirectBackend class method) (libertem.io.dataset.base.IOBackend class method)

plot_class (libertem.api.Context attribute) polar_map() (in module libertem.masks) PoolStateError PoolWorkerInfo (namedtuple in libertem.executor.pipelined) process (namedtuple field) queues (namedtuple field) spec (namedtuple field) postprocess() (libertem.udf.base.UDFPostprocessMixin method) PreallocBufferWrapper (class in libertem.common.buffers) preprocess() (libertem.udf.base.UDFPreprocessMixin method) process_frame() (libertem.udf.base.UDFFrameMixin method) process_partition() (libertem.udf.base.UDFPartitionMixin method) process_tile() (libertem.udf.base.NoOpUDF method) (libertem.udf.base.UDFTileMixin method) progress_id (libertem.common.progress.ProgressState attribute) ProgressReporter (class in libertem.common.progress) ProgressState (class in libertem.common.progress)

Q

queues (namedtuple field) PoolWorkerInfo (namedtuple in libertem.executor.pipelined)

R

r (namedtuple field) CoMParams (namedtuple in libertem.udf.com) regression (namedtuple field) CoMParams (namedtuple in libertem.udf.com) request (namedtuple field) WorkerQueues (namedtuple in libertem.executor.pipelined) response (namedtuple field) WorkerQueues (namedtuple in libertem.executor.pipelined) ri (namedtuple field) CoMParams (namedtuple in libertem.udf.com) radial_bins() (in module libertem.masks) radial_gradient() (in module libertem.masks) radial_gradient_background_subtraction() (in module libertem.masks) RadialFourierResultSet (class in libertem.analysis.radialfourier) raw_data (libertem.analysis.base.AnalysisResult attribute) (libertem.common.buffers.BufferWrapper property) (libertem.common.buffers.PlaceholderBufferWrapper property) (libertem.executor.utils.dask_buffer.DaskResultBufferWrapper property) raw_masked_data (libertem.common.buffers.BufferWrapper property) raw_results (libertem.analysis.base.AnalysisResultSet attribute) (libertem.analysis.radialfourier.RadialFourierResultSet attribute) RawCSRDataSet (class in libertem.io.dataset.raw_csr) RawFileDataSet (class in libertem.io.dataset.raw) RecordUDF (class in libertem.udf.record) rectangular() (in module libertem.masks) registry (libertem.io.dataset.base.IOBackend attribute) requires_custom_merge (libertem.udf.base.UDF property) requires_custom_merge_all (libertem.udf.base.UDF property) reshaped_view() (in module libertem.common.buffers) ResultAsyncGenerator (class in libertem.api) ResultGenerator (class in libertem.api) ring() (in module libertem.masks) roi (libertem.udf.base.UDFMeta property) run() (libertem.api.Context method) run_analysis_crystall() (in module libertem.udf.crystallinity) run_each_host() (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method)

run_each_partition() (libertem.common.executor.JobExecutor method) (libertem.executor.dask.DaskJobExecutor method) run_each_worker() (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) run_fem() (in module libertem.udf.FEM) run_function() (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) run_stddev() (in module libertem.udf.stddev) run_tasks() (libertem.common.executor.AsyncJobExecutor method) (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) run_udf() (libertem.api.Context method) run_udf_iter() (libertem.api.Context method) RunUDFAGenType (in module libertem.api) RunUDFAGenTypeL (in module libertem.api) RunUDFGenType (in module libertem.api) RunUDFGenTypeL (in module libertem.api)

S

scan_rotation (namedtuple field) CoMParams (namedtuple in libertem.udf.com) GuessResult (namedtuple in libertem.udf.com) spec (namedtuple field) PoolWorkerInfo (namedtuple in libertem.executor.pipelined) scatter() (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.delayed.DelayedJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) scatter_update() (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) scatter_update_patch() (libertem.common.executor.JobExecutor method) (libertem.executor.concurrent.ConcurrentJobExecutor method) (libertem.executor.dask.DaskJobExecutor method) (libertem.executor.inline.InlineJobExecutor method) (libertem.executor.pipelined.PipelinedExecutor method) schedule_task() (in module libertem.executor.pipelined) SCHEMA (libertem.io.dataset.base.PartitionStructure attribute) search_start() (libertem.io.dataset.base.FileTree method) SEQDataSet (class in libertem.io.dataset.seq) SERDataSet (class in libertem.io.dataset.ser) serialize() (libertem.io.dataset.base.PartitionStructure method) set_buffer() (libertem.common.buffers.AuxBufferWrapper method) set_corrections() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.Partition method) set_file_limit() (in module libertem.common.backend) set_idx() (libertem.io.dataset.base.Partition method) set_io_backend() (libertem.io.dataset.base.Partition method) set_num_cores() (libertem.io.dataset.base.DataSet method) set_thread_name() (in module libertem.executor.pipelined) set_use_cpu() (in module libertem.common.backend) set_use_cuda() (in module libertem.common.backend) set_worker_context() (libertem.io.dataset.base.BasePartition method) (libertem.io.dataset.base.Partition method) set_worker_log_level() (in module libertem.executor.dask)

Shape (class in libertem.common.shape) shape (libertem.common.buffers.BufferWrapper property) (libertem.common.slice.Slice attribute) (libertem.io.dataset.base.DataSet property) (libertem.io.dataset.base.DataTile property) (libertem.io.dataset.base.Partition property) (libertem.io.dataset.base.TilingScheme property) shift() (libertem.common.slice.Slice method) shift_by() (libertem.common.slice.Slice method) sig (libertem.common.shape.Shape property) (libertem.common.slice.Slice property) sig_dims (libertem.common.shape.NavOnlyShape property) (libertem.common.shape.Shape property) (libertem.common.shape.SigOnlyShape property) sig_shape (libertem.io.dataset.base.File property) sig_slice (libertem.udf.base.UDFMeta property) SigOnlyShape (class in libertem.common.shape) SingleDMDataSet (class in libertem.io.dataset.dm_single) SingleMaskResultSet (class in libertem.analysis.masks) size (libertem.common.shape.Shape property) (libertem.io.dataset.base.DataTile property) Slice (class in libertem.common.slice) slice (libertem.udf.base.UDFMeta property) slices (libertem.io.dataset.base.TilingScheme property) slices_array (libertem.io.dataset.base.TilingScheme property) SliceUsageError SPARSE_BACKENDS (libertem.udf.base.UDF attribute) sparse_circular_multi_stack() (in module libertem.masks) sparse_template_multi_stack() (in module libertem.masks) sparse_to_coo() (in module libertem.common.sparse) StackedDMDataSet (class in libertem.io.dataset.dm) start() (libertem.common.progress.ProgressReporter method) start_idx (libertem.io.dataset.base.File property) StdDevUDF (class in libertem.udf.stddev) subslices() (libertem.common.slice.Slice method) SUBTRACT_LINEAR (libertem.udf.com.RegressionOptions attribute) SUBTRACT_MEAN (libertem.udf.com.RegressionOptions attribute) SumResultSet (class in libertem.analysis.sum) SumSigUDF (class in libertem.udf.sumsigudf) SumUDF (class in libertem.udf.sum) supports_correction() (libertem.io.dataset.base.DataSet method)

T

threads_per_worker (libertem.udf.base.UDFMeta property) TILE (libertem.common.udf.UDFMethod attribute) TILE_DEPTH_DEFAULT (libertem.udf.base.UDF attribute) TILE_DEPTH_MAX (libertem.udf.base.UDF attribute) TILE_SIZE_BEST_FIT (libertem.udf.base.UDF attribute) TILE_SIZE_MAX (libertem.udf.base.UDF attribute) tiling_scheme (libertem.udf.base.UDFMeta property) tiling_scheme_idx (libertem.udf.base.UDFMeta property) TilingScheme (class in libertem.io.dataset.base)

title (libertem.analysis.base.AnalysisResult attribute) to_dense() (in module libertem.common.sparse) to_numpy() (in module libertem.common.buffers) to_sparse() (in module libertem.common.sparse) to_string() (libertem.io.dataset.base.FileTree method) to_tuple() (libertem.common.shape.NavOnlyShape method) (libertem.common.shape.Shape method) (libertem.common.shape.SigOnlyShape method) TVIPSDataSet (class in libertem.io.dataset.tvips)

U

UDF (class in libertem.udf.base) UDF_METHOD (libertem.udf.base.UDF attribute) UDFException (class in libertem.common.exceptions) UDFFrameMixin (class in libertem.udf.base) UDFMergeAllMixin (class in libertem.udf.base) UDFMeta (class in libertem.udf.base) UDFPartitionMixin (class in libertem.udf.base) UDFPostprocessMixin (class in libertem.udf.base) UDFPreprocessMixin (class in libertem.udf.base) UDFResults (class in libertem.udf.base)

UDFRunCancelled (class in libertem.common.exceptions) UDFTileMixin (class in libertem.udf.base) update() (libertem.common.progress.ProgressReporter method) (libertem.viz.base.Dummy2DPlot method) (libertem.viz.base.Live2DPlot method) (libertem.viz.bqp.BQLive2DPlot method) (libertem.viz.gms.GMSLive2DPlot method) (libertem.viz.mpl.MPLLive2DPlot method) update_parameters_experimental() (libertem.api.ResultAsyncGenerator method) (libertem.api.ResultGenerator method) USE_NATIVE_DTYPE (libertem.udf.base.UDF attribute)

V

valid_mask (libertem.common.buffers.BufferWrapper property) valid_slice_bounding (libertem.common.buffers.BufferWrapper property) validate() (libertem.io.dataset.base.Negotiator method)

validate_tiling_scheme() (libertem.io.dataset.base.Partition method) visualize_simple() (in module libertem.viz.base) visualized (libertem.analysis.base.AnalysisResult attribute)

W

where (libertem.common.buffers.BufferWrapper property) with_mask() (libertem.udf.base.UDF static method) with_params() (libertem.udf.com.CoMUDF class method) worker_loop() (in module libertem.executor.pipelined) worker_run_function() (in module libertem.executor.pipelined) worker_run_task() (in module libertem.executor.pipelined) WorkerPool (class in libertem.executor.pipelined)

WorkerQueues (namedtuple in libertem.executor.pipelined) message (namedtuple field) request (namedtuple field) response (namedtuple field) WorkerSpec (class in libertem.executor.pipelined) WritableDataSet (class in libertem.io.dataset.base) WritablePartition (class in libertem.io.dataset.base)

X

x (libertem.analysis.com.COMResultSet attribute) x_imag (libertem.analysis.com.COMResultSet attribute)

x_real (libertem.analysis.com.COMResultSet attribute) xp (libertem.udf.base.UDF property)

Y

y (libertem.analysis.com.COMResultSet attribute)

y_imag (libertem.analysis.com.COMResultSet attribute) y_real (libertem.analysis.com.COMResultSet attribute)

Z

zeros() (libertem.common.buffers.BufferPool method)

zeros_aligned() (in module libertem.common.buffers)