LiberTEM

Acknowledgements

We are very grateful for your continuing support for LiberTEM!

Please help us keeping these lists up-to-date and complete! If you feel that you should be listed here, please contact us or open a pull request. We are grateful for every contribution, and if your contribution is not listed here we’d like to extend our apologies and update this as soon as possible.

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LiberTEM

Creators

The following people in alphabetical order contributed to source code, documentation, design and management following our Authorship Policy

Anand Baburajan (Government Engineering College Sreekrishnapuram) ORCID GitHub
Reshaping and offset for datasets, various GUI fixes
Abijith Bahuleyan (Government Engineering College Sreekrishnapuram) ORCID GitHub
Notebook download for analyses, bug fixes, documentation
Matthew Bryan (CEA-Leti) ORCID GitHub
Dask integration, discussions, documentation, bug fixes, prototypes
Jan Caron (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
Discussions, advanced color wheel for vector field visualization
Rahul Chandra (Chandigarh University) ORCID GitHub
Test and update of examples
Alexander Clausen (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
System design, engineering, implementation, documentation, management, majority of the code
Sivert J.V. Dagenborg (Norwegian University of Science and Technology) ORCID GitHub
Code, tests, code in related projects
Shankhadeep Dey (Siliguri Institute of Technology) GitHub
Added types to libertem.api.Context #643
Rafal E. Dunin-Borkowski (Jülich Research Centre, Ernst Ruska Centre) ORCID
Scientific advisory, resources, discussion, publications
Sayandip Halder (Jadavpur University) ORCID GitHub
Modifying the documentation to make it more user-friendly
Daniel S. Katz (University of Illinois at Urbana-Champaign) ORCID GitHub
Fixes in BibTeX for JOSS paper
Barnaby D.A. Levin (Direct Electron) ORCID GitHub
Discussions, ensuring compatibility with data from Direct Electron cameras
Vadim Migunov (RWTH Aachen University, Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
Scientific advisory, discussion, sample data, binning prototype, holography features
Knut Müller-Caspary (Jülich Research Centre, Ernst Ruska Centre) ORCID
Scientific advisory, discussion, sample data regarding strain mapping, sample code for MIB reader
Magnus Nord (University of Antwerp) ORCID GitHub
Discussions, tests, code in related projects
Colin Ophus (Lawrence Berkeley National Laboratory) ORCID GitHub
Discussions, sample code for K2 reader, overview of related projects, reference files
Simon Peter GitHub
Help with setting up AppImage building and Continuous Integration
Levente Puskás (University of Szeged) GitHub
Issue 805: Implemented XML support for seq files
Karina Ruzaeva (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
Fast diffraction analysis
Jay van Schyndel (Monash University eResearch Centre) GitHub
Fix issue 80 to allow container deployment
Jaeweon Shin (ETH Zürich) GitHub
Single pass numerically stable standard deviation
Sai Sunku (Columbia University) GitHub
Bug fixes
Dieter Weber (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
Management, requirements analysis, system design, testing, documentation, communication
Håkon Wiik Ånes (Norwegian University of Science and Technology) ORCID GitHub
Continuous integration

Contributors

The following people in alphabetical order contributed to the LiberTEM project in other ways.

@theassassin GitHub
Help with setting up AppImage building and Continuous Integration
Juri Barthel (FZ Jülich)
Discussions, compatibility with Dr. Probe
Reimar Bauer (FZ Jülich)
Help with Google Summer of Code 2019 and 2020
Julian Becker (X-Spectrum)
Discussions, system design, funding applications
Andreas Beckmann (X-Spectrum)
Discussions, system design, funding applications
Robert Bücker (MPSD)
Discussions, sample files
Phillip Crout (pyXem)
Discussions, work towards mutual compatibility.
Simeon Ehrig (HZDR) GitHub
Discussions, ptychography integration concepts, GPU integration concepts
Alberto Eljarrat Ascunce (HU Berlin) GitHub
Nion Swift hackathon, feedback and discussions
Peter Ercius (Berkeley Lab)
Re-licensing ncempy <https://github.com/ercius/openNCEM/>_ under MIT license to allow using it in the IO part of LiberTEM, enabling full K2IS raw file, DM3/DM4, and SER support.
Andrey Fedorov (Brigham and Women’s Hospital) ORCID GitHub
Review JOSS paper, help with installation instructions on zsh
Caroline Fuery (Microscopy Australia)
Discussions, supporting deployment on Australian eResearch infrastructure
Patrick Furhmann (DESY)
Discussions, system architecture
John Gaida (Göttingen University) GitHub
Help with Norpix SEQ support #153 #767, testing for TVIPS format #1179
Wojtek James Goscinski (Monash)
Discussions, supporting deployment on Australian eResearch infrastructure
Giulio Guzzinati (U Antwerp)
Discussions and publication https://arxiv.org/abs/1902.06979 leading to the affine transformation strain map
Benedikt Haas (HU Berlin) GitHub
Nion Swift hackathon, discussions, bug reports
Chris Hines (Monash)
Discussions, supporting deployment on Australian eResearch infrastructure
Lothar Houben (Weizmann)
Discussions
Huang Chen (Rosalind Franklin Institute)
Help with quad QD Merlin support
Martin Huth (PNDetector)
Discussions, sample files, documentation for implementing FRMS6 support
Pete Jemian (NeXus project)
Discussions and support regarding NeXus file format
Mark Jensen (Frederick National Laboratory for Cancer Research) ORCID GitHub
Finishing touches review JOSS paper
Duncan N. Johnstone (pyXem)
Discussions, work towards mutual compatibility.
Christoph Koch (HU Berlin)
Discussions
Matus Krajnak (Quantum Detectors)
Bug report and fix regarding MIB format
Alexander Krings (FZ Jülich)
Discussions, requirements description
Siu Kwan Lam (Anaconda Inc.) GitHub
Help work around issue with Numba in GMS
Weng I Lei (Gatan)
Discussions, Python support in GMS
Anastasiia Lesnichaia (FZ Jülich)
Prototyping for scalable implementation of Single Side Band ptychography, WIP
Emanuela Liberti (Rosalind Franklin Institute)
Help with quad QD Merlin support
Penghan Lu (FZ Jülich)
Scientific advisory, discussion, sample data
Ian MacLaren (U Glasgow)
Sample data for peak selector example, discussions, advisory
Christoph Mahr (U Bremen)
Discussions leading to the full frame refinement code
Shane McCartan (U Glasgow)
Sample data for peak selector example
Heide Meissner (HZDR)
Discussions, funding applications
Andreas Mittelberger (Nion) GitHub
Nion Swift integration; feedback and discussions
Grigore Moldovan (Point Electronic)
Discussions
Johannes Müller (HU Berlin)
Nion Swift Hackathon, Discussions
Eduardo Nebot (Quantum Detectors)
Support, discussions, sample files, funding applications
Liam O’Ryan (Quantum Detectors)
Support, discussions, sample files, funding applications
Terri Oda (Python Software Foundation) GitHub
Managing GSoC 2019 and 2020 under the umbrella of the Python Software Foundation
Marco Oster (TVIPS)
Help with implementing the TVIPS reader
Ana Pakzad (Gatan)
Discussions, support for implementing K2 raw file format
Thomas C. Pekin (HU Berlin) GitHub
Nion Swift hackathon, feedback and discussions
Francisco de la Peña (Lille)
Discussions
Tobias Richter (NeXus project)
Discussions and support regarding NeXus file format
Robert Ritz (PNDetector)
Discussions, sample files, documentation for implementing FRMS6 support
Kunt Sander (DESY)
Discussions, system architecture
Marcel Schloz (HU Berlin)
Nion Swift hackathon, feedback and discussions
Michael Schuh (DESY)
Discussions, system architecture
Sherjeel Shabih (HU Berlin) GitHub
Nion Swift hackathon, feedback and discussions
Martin Simson (PNDetector)
Discussions, sample files, documentation for implementing FRMS6 support
Peter Sparlinek (TVIPS)
Help with implementing the TVIPS reader
Andy Stewart (U Limerick)
Discussions
Murali Sukumaran (HZM)
Discussions, funding applications
Eugene Sweeney (Iambic Innovation)
Discussions, proposal review
Jo Verbeeck (U Antwerp)
Open data https://zenodo.org/record/2566137
Paul Voyles (U Wisconsin)
Discussions
Benjamin Watts (PSI)
Help and sample files towards a NeXus Application Definition for pixelated STEM.
Roger Wepf (U Queensland)
Discussions, supporting deployment on Australian eResearch infrastructure
Jacob Wilbrink (Gatan)
Discussions, support for implementing K2 raw file format
Lance Wilson (Monash)
Discussions, supporting deployment on Australian eResearch infrastructure
Florian Winkler (FZ Jülich)
Discussions, requirements description
Markus Wollgarten (HZB)
Discussions, funding applications
Wolfgang zu Castell (HZM)
Discussions, funding applications

LiberTEM-live

Creators

The following people in alphabetical order contributed to source code, documentation, design and management following our Authorship Policy

Matthew Bryan (CEA-Leti) ORCID GitHub
Manual triggering for Merlin simulator, packaging, testing
Alexander Clausen (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
System design, engineering, implementation, documentation, management, majority of the code
Volker Pilipp (DECTRIS Ltd)
DEigerClient.py for DECTRIS support
Dieter Weber (Jülich Research Centre, Ernst Ruska Centre) ORCID GitHub
Management, requirements analysis, system design, testing, documentation, communication

Contributors

The following people in alphabetical order contributed to the LiberTEM-live project in other ways.

Lucas Brauch (KIT, Electron Microscopy and Spectroscopy Laboratory)
Help with implementing and testing DECTRIS support
Dmitry Byelov (Amsterdam Scientific Instruments)
Help with ASI TPX3 support
Rafal E. Dunin-Borkowski (Jülich Research Centre, Ernst Ruska Centre) ORCID
Scientific advisory, resources
Chen Huang (Rosalind Franklin Institute, Correlated Imaging)
Help with improving Merlin Medipix support
Maurits Kelder (Amsterdam Scientific Instruments)
Help with ASI TPX3 support
Emanuela Liberti (Rosalind Franklin Institute, Correlated Imaging)
Help with improving Merlin Medipix support
Matthias Meffert (DECTRIS)
Help with implementing and testing DECTRIS support
Xiaoke Mu (KIT, Electron Microscopy and Spectroscopy Laboratory)
Help with implementing and testing DECTRIS support
Elisabeth Müller (PSI, Electron Microscopy Facility)
Collaboration on DECTRIS ARINA support
Knut Müller-Caspary (Jülich Research Centre, Ernst Ruska Centre) ORCID
Scientific advisory, discussion
Emiliya Poghosyan (PSI, Electron Microscopy Facility)
Collaboration on DECTRIS ARINA support
Achim Strauch (Jülich Research Centre, Ernst Ruska Centre)
Testing
Daniel Stroppa (DECTRIS)
Help with implementing and testing DECTRIS support
Maximilian Töllner (KIT, Electron Microscopy and Spectroscopy Laboratory)
Help with implementing and testing DECTRIS support
Rick Watertor (Amsterdam Scientific Instruments)
Help with ASI TPX3 support

LiberTEM-blobfinder

Creators

The following people in alphabetical order contributed to source code, documentation, design and management following our Authorship Policy

Matthew Bryan (CEA-Leti) ORCID GitHub
Upsampling DFT refinement
Alexander Clausen (Jülich Research Centre) ORCID GitHub
Package structure, LiberTEM core, reviews
Rafal E. Dunin-Borkowski (Jülich Research Centre) ORCID
Scientific advisory, resources, discussion, publications
Knut Müller-Caspary (Jülich Research Centre) ORCID
Scientific advisory, discussion, sample data regarding strain mapping, sample code for MIB reader
Karina Ruzaeva (Jülich Research Centre) ORCID GitHub
Fast diffraction analysis
Dieter Weber (Jülich Research Centre) ORCID GitHub
Management, requirements analysis, system design, testing, documentation, communication

Contributors

The following people in alphabetical order contributed to the LiberTEM-blobfinder project in other ways.

Reimar Bauer (FZ Jülich)
Help with Google Summer of Code 2019
Phillip Crout (pyXem)
Discussions, work towards mutual compatibility.
Giulio Guzzinati (U Antwerp)
Discussions and publication https://arxiv.org/abs/1902.06979 leading to the affine transformation strain map
Duncan N. Johnstone (pyXem)
Discussions, work towards mutual compatibility.

LiberTEM-holo

Creators

The following people in alphabetical order contributed to source code, documentation, design and management following our Authorship Policy

** ()** ORCID GitHub

Contributors

The following people in alphabetical order contributed to the LiberTEM-holo project in other ways.

TODO (TODO)
TODO