.. LiberTEM documentation master file, created by
   sphinx-quickstart on Wed May  2 15:54:09 2018.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

LiberTEM - Open Pixelated STEM platform
=======================================

.. include:: ../../README.rst
..   see also: https://muffinresearch.co.uk/selectively-including-parts-readme-rst-in-your-docs/
..   later, maybe :start-after: inclusion-marker-do-not-remove


Documentation
=============

.. toctree::
   :maxdepth: 2
   :caption: User manual
   
   install
   usage
   applications
   formats
   sample_datasets
   api
   udf
   dask
   changelog
   citing
   acknowledgments

.. toctree::
   :maxdepth: 2
   :caption: Reference

   reference/index
   tips
   packages
   concepts
   performance
   why_python

.. toctree::
   :maxdepth: 2
   :caption: For developers

   dev/setup.rst
   contributing
   debugging
   architecture
   dev/how-io-works
   dev/executors
   authorship

Indices and tables
------------------

* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`

Citations
---------

.. bibliography:: references-libertem.bib